rs3726349 SNP Detail

Summary

• ID
  rs3726349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70318614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGAGTA CTATAATGTC
  TGAACAAGGT TTTAGTGGGT AAAAGCCTAC CTTAATATAG GAACTTGGAT ACAGGTATTG
  TAAATCCCTC TATTAAAATC AACTTTGGAA CTTAAAACTA AACAAAACTT GGCAGGGCTA
  TGCATGTCTG TAAGCTTAGC ACTGGGAGGG ACAGAGATGC TCTAAATCAT TGCATTATCA
  R
  TATTGACAGA TCCTGGGGTC TTGCTAGACA GCTGCTAACC AGCCAGCCTA GCTGGAAACG
  CAAGCTTCTG GTTCACTGAG CGATCCTGTC TCAAGGGAAT AAGGCAGTCA GTGACAGGGG
  AAAACGCTTG CCATCTTTCT CTGGCCATTA CATATACCTA CACAGACATA CACACCTGCA
  CATTCATATG CATACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5102663	WI_WGS_4_67727107	WI	MOUSE	f	SNP	G			A
ss146495729	ENSMUSSNP1737841	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3726349					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70318614 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			983 bp distal
Rr593870	regulatory region 593870			1500 bp proximal
Rr593871	regulatory region 593871			1925 bp proximal