rs37262971 SNP Detail

Summary

• ID
  rs37262971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATAGCTC AAAAATGTTC
  TTTTCACAAT TACAAAATCA TGATTGCTAC CAATCTGAAA AACAGAAAAT ATAAATAAAT
  ACTGTCCCAA ATATCTAGAC ACAAGGAAGT GGAAGACCTT CCACAATAAC GGAAAGTTTC
  ACTACTATTC AGTGTTTTGT GAACACCCTT TCAAGGCCTC TCTCAAATGT GCCATAAGTG
  K
  GCTTCGGGTT AAGCCCAGTC CAGCCAGCAG CACAGAGCGG CACTGACGAG CCACTGCTCT
  CTGGACTGGG GAGGAGGCGT GCTGCCCTCT AGTGACTCAA CAGCACAGAC TGGGGAGGAG
  GCGTGCTGCC CTCTAGTGAC AACAGCACAG TCAACAAGAA GCCCCTCAGA GGTAGGAAAT
  GTCCATGCTG TTAGGAAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51059804	NES13424272	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G	G	T	T	T	G	T	T	T
ss136102260	ENSMUSSNP6645935	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37262971					SNP	T	T	G	T	G	T	G	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059804	NES13424272	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			464 bp distal
Rr587524	regulatory region 587524			within coordinates
Rr587525	regulatory region 587525			79 bp proximal
Rr587526	regulatory region 587526			123 bp proximal
Rr587527	regulatory region 587527			542 bp proximal
Rr587528	regulatory region 587528			834 bp proximal