rs37262961 SNP Detail

Summary

• ID
  rs37262961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33969740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATTAAA TGGTGTGACC
  CGACCTAGTT CTTGCACGCG GGGCACCATC TCCTAATCAA AACCACAAAG CAGCTGAGCG
  GGCTGTGAAA AGAAATCGAG AGCTGCATCT TAAATACCAG ATTAACTGCT GTAGTTGGGG
  AAGGGGGGGG GGGAGGGGAT GACAGGGGTG GGCGTGGCTA GAACAAGCCC AGCCCTTCTT
  Y
  AGAGTAATGG GAGGTGCTGC CGTCAGCGGT CAAAGATCAA AGGGTCCACC ATGCTGTCTT
  TAGAACATAG TTCTAGCTCT TGGGACAAGA GGCGTGGCAG AGAATGGCCA TGTACACACA
  GCAGGTTTTA GGACTAAGCA AGGAGAATTC ATGTTGAAGC AGTGATGCTT CGTGTCCTGG
  AGAAGGTCAG CACTCCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51592407	NES14853075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37262961					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51592407	NES14853075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33969740 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	388 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	633 bp distal
Rr628236	regulatory region 628236	within coordinates
Tssr60221	transcription start site region 60221	596 bp upstream
Tssr60222	transcription start site region 60222	429 bp upstream
Tssr60223	transcription start site region 60223	385 bp upstream