rs3725979 SNP Detail

Summary

• ID
  rs3725979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95783970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACTGGA TTCTTCTGTT
  TCTAGATTTT TGGGTCCAAG TTTGCACATT AACCTCAGTT TTCTACCTAA TTTTAACTCA
  AGAAGAGTCT GTAGTTGGGA GTTTGCTGGC TTTTCCTGTT GTCTGGATCC CATGTGATGG
  AGCTGCAATC AGGAGTCTCT TTTTGCTGTA TTTCTTTGGG AGGTGGTGGT TTTGGTTTTT
  R
  AGACAGGGTT TCTCTCTGTA TCCCTGGCAG TTCTAGAACA TTTTGCAGAC CAGGCTGGCT
  TCAAAATCAG AGATCTGCCT GCCTCTGCCT GGAAAGTGCT GGGATTAAAG GTGTGCGCCA
  TCACATCCGG CTACTGAATT TCTTTACTGT TGCCCTAGCC CCCCTTATTT GAAGGTATAC
  ATTTCCTAGT GGGTTTCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5102293	WI_WGS_4_93628490	WI	MOUSE	f	SNP	A			G
ss147068240	ENSMUSSNP1687037	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321216034	CHEV_4_95562424	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3725979					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95783970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			194 bp distal
Rr595486	regulatory region 595486			655 bp proximal
Rr595487	regulatory region 595487			1575 bp proximal
Rr595488	regulatory region 595488			1598 bp proximal
Rr595489	regulatory region 595489			1731 bp proximal