rs3725845 SNP Detail

Summary

• ID
  rs3725845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70318558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGCCAA AATGGGGAAT
  GGAAATTTTT TTAAAGTCAT TAATGAAAAC CATTGTTGTG TGAGTACTAT AATGTCTGAA
  CAAGGTTTTA GTGGGTAAAA GCCTACCTTA ATATAGGAAC TTGGATACAG GTATTGTAAA
  TCCCTCTATT AAAATCAACT TTGGAACTTA AAACTAAACA AAACTTGGCA GGGCTATGCA
  Y
  GTCTGTAAGC TTAGCACTGG GAGGGACAGA GATGCTCTAA ATCATTGCAT TATCAATATT
  GACAGATCCT GGGGTCTTGC TAGACAGCTG CTAACCAGCC AGCCTAGCTG GAAACGCAAG
  CTTCTGGTTC ACTGAGCGAT CCTGTCTCAA GGGAATAAGG CAGTCAGTGA CAGGGGAAAA
  CGCTTGCCAT CTTTCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5102159	WI_WGS_4_67727051	WI	MOUSE	f	SNP	C			T
ss146495725	ENSMUSSNP5637379	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3725845					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70318558 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdk5rap2	CDK5 regulatory subunit associated protein 2			Intron
				Noncoding-Transcript-Variant
Rr593869	regulatory region 593869			927 bp distal
Rr593870	regulatory region 593870			1556 bp proximal
Rr593871	regulatory region 593871			1981 bp proximal