rs3725826 SNP Detail

Summary

• ID
  rs3725826
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137574288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAC ACAACACTCA CAAAGCGCCA
  M
  GAGTTGTGCC TAGTATTTTA TATGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5102140	WI_WGS_3_138370314	WI	MOUSE	f	SNP		A	C
ss135944572	ENSMUSSNP1155902	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss320976926	CHEV_3_137531491	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3725826					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137574288 () rs orientation: forward

Symbol	Name	Function Class
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	Intron
H2az1	H2A.Z variant histone 1	1605 bp downstream
Rr586006	regulatory region 586006	842 bp distal
Rr586007	regulatory region 586007	751 bp distal
Rr586008	regulatory region 586008	933 bp proximal
Tssr31918	transcription start site region 31918	730 bp downstream
Tssr31919	transcription start site region 31919	693 bp downstream
Tssr31920	transcription start site region 31920	651 bp downstream
Tssr31921	transcription start site region 31921	614 bp downstream
Tssr31922	transcription start site region 31922	563 bp downstream
Tssr31923	transcription start site region 31923	458 bp downstream
Tssr31924	transcription start site region 31924	410 bp downstream
Tssr31925	transcription start site region 31925	398 bp downstream