rs3725316 SNP Detail

Summary

• ID
  rs3725316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107347085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGTGG ACTTAGGAAC
  AGCCAAGAAC AGAACTGGAA GGCATAGGGA ACCCAGGGCT AAGAGGCAAG GAAGAGCTGG
  GGTGGTACAG GAGTGAAGTG AGCCCTTCAT TTCTCCTCTG CCATCCCACC TCCAGGCCAT
  GGAGACCCAG AGGATGCTGA AGCTCGGGTA ACCATTTCCA AGAACTAATA CCATCTCCAG
  Y
  CTTCAGAGTT CTAATGCAGC AGGGAGAGGA ACCATAGCAC ACTCTACATA GCTGAGCAGA
  GAGGTATGGT GGTGGTGGGG AATCCCTGAT GTGGACTATG GCTTATGGAC GACCACTCCA
  GCTTGTCTCT ACTCAATTTG TGCACTACCC CCAAAGAGCT CCATCTGCCC TCACCACCAT
  GGACAATCCC ACTATCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5101625	WI_WGS_3_107932639	WI	MOUSE	f	SNP	T							C
ss45551524	mCV24802286	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss46855584	NES10710835	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	T	C	T	T	C
ss135584026	ENSMUSSNP5438903	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3725316					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855584	NES10710835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107347085 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			572 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			281 bp distal