rs3725292 SNP Detail

Summary

• ID
  rs3725292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107347073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTGACC CACAGGCTGT
  GGACTTAGGA ACAGCCAAGA ACAGAACTGG AAGGCATAGG GAACCCAGGG CTAAGAGGCA
  AGGAAGAGCT GGGGTGGTAC AGGAGTGAAG TGAGCCCTTC ATTTCTCCTC TGCCATCCCA
  CCTCCAGGCC ATGGAGACCC AGAGGATGCT GAAGCTCGGG TAACCATTTC CAAGAACTAA
  Y
  ACCATCTCCA GCCTTCAGAG TTCTAATGCA GCAGGGAGAG GAACCATAGC ACACTCTACA
  TAGCTGAGCA GAGAGGTATG GTGGTGGTGG GGAATCCCTG ATGTGGACTA TGGCTTATGG
  ACGACCACTC CAGCTTGTCT CTACTCAATT TGTGCACTAC CCCCAAAGAG CTCCATCTGC
  CCTCACCACC ATGGACAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss5101601	WI_WGS_3_107932627	WI	MOUSE	f	SNP	C							T
ss45500877	mCV24802296	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss46855581	NES10710834	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	C	T	T	T
ss135584023	ENSMUSSNP257864	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs3725292					SNP	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855581	NES10710834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107347073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			584 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			269 bp distal