rs3724723 SNP Detail

Summary

• ID
  rs3724723
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52748175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAAAAG GGGAGGGGGG
  TCACAACGTT TAATTCTTAG TGACCTAAAG TCAGCTAAAG TCAGCTTCAC TAACGACCAG
  GAAATGCCTG ACCCTCGGGT CCTCACTGTT GTCATGAACT CCAAACGTTT TAAAAATGGA
  AATTAAAAAA AAAAAAAGTA ATTACCTCTT AGCGTGTTAA AAAGTTAAGT TGAATTGCCC
  R
  TTACCATGGA GATGGCTTCC TGTTTACCAC ACTGGTCGCC CAGCTGTTGA AGACCAGCCA
  CCCAGCCAAT GAAAAGACAG CTTTTAGCTT CCCTTATTCC ATTAGTGCTT CAAATAGTGA
  GTCAATACAA CCTGTAATTT ACTAGTCGGT AAAATTTGAT AAATTGTGTT TTCATATATA
  TTAGTGGTTT TACGTTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5101028	WI_WGS_3_53294588	WI	MOUSE	f	SNP	G						A
ss45401360	mCV24465366	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss46932557	NES10828296	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G		G	A	A	G		G	G	G		A
ss135178666	ENSMUSSNP5788725	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320765409	CHEV_3_52644676	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3724723					SNP	G	A	G	G	G	G	A	G	A	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932557	NES10828296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52748175 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	362 bp upstream
Gm65967	predicted gene, 65967	171 bp downstream
Rr576589	regulatory region 576589	373 bp distal
Rr576590	regulatory region 576590	within coordinates