rs3724712 SNP Detail

Summary

• ID
  rs3724712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119094132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAAGTATG TTGAAAATGG CTGATAAAAC ACATGTTTTC
  CCCCAAAACT GTGAAACTGA GAGGAAGGAA GGAAGGTGCA GCTGAGACAC CAGAAGGGCC
  R
  CTCCCAGCTG CAGACTGCCT CTGAACACCA CATAGGATGC TAAGCTGGAG GGAGAAAGCC
  AAGTCCTTAA GACCTTGACC TGTATGTGAA CACTCAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
ss5101017	WI_WGS_6_119909671	WI	MOUSE	f	SNP			G	A
ss45886060	mCV22292883	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	G
ss133587712	ENSMUSSNP4771717	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J
rs3724712					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119094132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			671 bp distal
Rr637596	regulatory region 637596			1383 bp proximal