rs3724683 SNP Detail

Summary

• ID
  rs3724683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119094123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GAAGGTGCAG CTGAGACACC
  R
  GAAGGGCCAC TCCCAGCTGC AGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss5100988	WI_WGS_6_119909662	WI	MOUSE	f	SNP					G		A
ss16376966	06.120.782	TWGNF	TWGNF-Mouse-2	f	SNP	G	G		G	G	G	A	A	G	A	A	G	G	G		G	G	A	A	G	G	G		G	G	A	G	G		G	G	A	G	A	A	G
ss45879516	mCV22292882	ABI	CRAMUS_MOUSE	f	SNP		G	G				A								G
ss48073601	NES11880618	PERLEGEN	MM_PANEL2	f	SNP	G		G		G	G										G		A					G			A			G						A
ss133587709	ENSMUSSNP7181568	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G												G
ss321927236	CHEV_6_119067180	CHEVERUD	SCREENING_POP	f	SNP																			A														G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs3724683					SNP	G	G	G	G	G	G	A	A	G	A	A	G	G	G	G	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48073601	NES11880618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119094123 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			662 bp distal
Rr637596	regulatory region 637596			1392 bp proximal