rs37244781 SNP Detail

Summary

• ID
  rs37244781
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75465792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTGAAAC AAAGACCTGG
  GTTTAGCCTA CAACGGGAAC ATATGGTGTA CTTCCTCGCT GCTTCTTATT CTCTCATTTG
  TGTCCGGTAA CGTTTGTTCG TGTTTTAAAA ACAGGAGTAC AAGGGAACTG TGTGGAGGAG
  CTTTCCTCTA TTGAAGAGAG TATGTGTAAA ATGATAACCT TTAGTATTTT ATAATGGGCT
  M
  TCATTTTAGA GGTATATAGT ATCACACAAT AATAGTTCAT TCTCATTGTG TGTATACTCT
  TTTGAATGCT AGTAATACAT ACGGGTGGAA TTATGTTGTA ATACTTGTTA TGTTAGGTAG
  TCAATCCTAC CTTTGCACCT ATGACAGATT ACAGCCTTTT GGGTTGGAAA AGTACTAAAA
  TTCTACGTGC TTAGTTCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss51557819	NES14678962	PERLEGEN	MM_PANEL2	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs37244781					SNP	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557819	NES14678962	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75465792 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13269	CpG island 13269			727 bp distal
Pdcd10	programmed cell death 10			1633 bp upstream
Rr578348	regulatory region 578348			1685 bp distal
Rr578349	regulatory region 578349			928 bp distal
Rr578350	regulatory region 578350			1627 bp distal
Rr578351	regulatory region 578351			within coordinates
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1			Intron
				Noncoding-Transcript-Variant
Tssr29563	transcription start site region 29563			964 bp downstream
Tssr29564	transcription start site region 29564			924 bp downstream
Tssr29565	transcription start site region 29565			898 bp downstream
Tssr29566	transcription start site region 29566			880 bp downstream
Tssr33586	transcription start site region 33586			1614 bp upstream
Tssr33587	transcription start site region 33587			1566 bp upstream
Tssr33588	transcription start site region 33588			1546 bp upstream