rs37242129 SNP Detail

Summary

• ID
  rs37242129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117863794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATGTG TGTGTCCATG
  TGCGTGTGTT GTGTTTGTGT GTATGTTTCT TCATGTGTGT GTCTGTTTCT CTGTGTGTGT
  CTGTACACAT ACACATGTTC ATAAATATGT ATGTATGTAT GTATGTATGT ATGTGTGTAT
  GTATATATGT GTGTGTAAGT GTGTGTATAA CTGTGTATGT GTGCTGTGTG TGTATGTTTC
  Y
  GAGAGCAAGG AAAGTTCAGT CAGCATTGCC TCACATAACA TCCTTCCCAC TGGGTCTCCT
  CTGTCTCACT ATAGTTCCCA CACATCATGG CTGAAGAGTT CACAGGAAAA GTCTTTCTTT
  TCTAGAAGTG CTGCATCATC ATAACCCTGT AAACTCTGCC CCAGTGCTGA AGTCTAACTT
  GGTTTCGAGG CTGAAGGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51597209	NES14669675	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C		C	T	T	C		T
ss320900849	CHEV_3_117773063	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37242129					SNP	T	C	C	C	C	C	C	C	C	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51597209	NES14669675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117863794 () rs orientation: forward

Symbol	Name	Function Class
Gm65635	predicted gene, 65635	within coordinates
Rr583881	regulatory region 583881	13 bp proximal
Rr583882	regulatory region 583882	287 bp proximal