rs3724149 SNP Detail

Summary

• ID
  rs3724149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107346918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGCAGG TCTCTGTGTT
  TAAAGAGCAC AGGTGTGAGA CACTGGGACG CACGCTTTCG GCTCAACATT GCCTTCTGGC
  GGGGGTGCGG GGTAAAGGGT TCAGCAAAAG AAAAGGAGAA ACAAAAAAAC AGAGACGTTA
  GAAGGAAGCC AGGCAGCCTC TGACCCACAG GCTGTGGACT TAGGAACAGC CAAGAACAGA
  R
  CTGGAAGGCA TAGGGAACCC AGGGCTAAGA GGCAAGGAAG AGCTGGGGTG GTACAGGAGT
  GAAGTGAGCC CTTCATTTCT CCTCTGCCAT CCCACCTCCA GGCCATGGAG ACCCAGAGGA
  TGCTGAAGCT CGGGTAACCA TTTCCAAGAA CTAATACCAT CTCCAGCCTT CAGAGTTCTA
  ATGCAGCAGG GAGAGGAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5100454	WI_WGS_3_107932472	WI	MOUSE	f	SNP	G							A
ss46855578	NES10710833	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G	A	G	G	A
ss135584020	ENSMUSSNP780750	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3724149					SNP	G	G	A	A	A	A	A	A	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855578	NES10710833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107346918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			739 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			114 bp distal