rs37240560 SNP Detail

Summary

• ID
  rs37240560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135591919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAAGTA TTATAATCTT
  CAACACTGGA CCAATACACA ATTTATTAAA AAATCTTGTC GCTCTGGGAG GAAAGAGCAA
  GCACAATGGA GAAACCAGAA CAGTAAAGAA AGCTACTTCA AAGAACAGGT TCAGTCAGTT
  ACACAAATGT TTTTCCCCTC CAGTCAGCCC GGAAAAATTA TGAGATGGGC GGGGAAGCGG
  Y
  TTCCATAAGT GTTTCTCTCC AGAGGAGCAA AGTCAGAATT TAAGCAAACA AAAATGTCAC
  CATCTAACAA GAAAAAAACC CAACACTTCA CCAACTCTGT GGTGGCACAA GGCAGGGTGA
  TTATTAAGTC CAAGATCGTC ATTAGTTACA TAGTGACATA GTGACATAGT AGGGCAGCCT
  GGGCTAAGCA AGAAACAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51646595	NES14650944	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	C
ss135929712	ENSMUSSNP4664122	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37240560					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51646595	NES14650944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135591919 () rs orientation: forward

Symbol	Name	Function Class
Rr585796	regulatory region 585796	within coordinates
Rr585797	regulatory region 585797	603 bp proximal
Slc39a8	solute carrier family 39 (metal ion transporter), member 8	Intron
Tssr31861	transcription start site region 31861	915 bp upstream
Tssr31862	transcription start site region 31862	1038 bp upstream