rs37236142 SNP Detail

Summary

• ID
  rs37236142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117227187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTTAAA AATTTCCTAA
  TTCAAGGCTT TACCCTTAAC TTAAAAAACA ACAACAGCAA CAACAACAAC AACAACAACA
  AACATGCTTC ATCTCCAGTT TTGTGGAGGG AAATAGAAAC CATCACACTC AGTTTTCTCT
  CTTCTTTCAA GTCACCCATG ATGTTCTGGG ACTGAGACTT CCCTGACAAT GCACTCCCAA
  Y
  GGAAAAGTTG CCGCTGTGCC CTTTGCCTGA AGTTTGGGAT CCTAAACTTA TTCACGTCTT
  CAAGGATTGT ATTCTGCTCT CTTTTGTTGT TGTTGGTAGT GGTTGTGGCA ACATCAAGTG
  ATGGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TACACGATCT CACACATAGG
  CTTTCACAGA GTTAAGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51011840	NES13912511	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37236142					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51011840	NES13912511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117227187 () rs orientation: forward

Symbol	Name	Function Class
D3Mit299	DNA segment, Chr 3, Massachusetts Institute of Technology 299	1385 bp distal
D3Mit299.1	DNA segment, Chr 3, Massachusetts Institute of Technology 299.1	1506 bp distal
Gm66094	predicted gene, 66094	1773 bp downstream