rs3723491 SNP Detail

Summary

• ID
  rs3723491
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148135022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG TTTGCCCAGC TGGTTTCCTG
  W
  CTTGCCTTGA GGATTACAGT TAAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5099796	WI_WGS_4_143410301	WI	MOUSE	f	SNP	T			T	A
ss45649923	mCV23437226	ABI	CRAMUS_MOUSE	f	SNP		T	A		A	T
ss147990730	ENSMUSSNP2024711	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A			T
ss321416681	CHEV_4_147424674	CHEVERUD	SCREENING_POP	f	SNP							T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3723491					SNP	T	T	A	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148135022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mthfr	methylenetetrahydrofolate reductase			Intron
				Noncoding-Transcript-Variant
Rr604563	regulatory region 604563			1757 bp distal
Rr604564	regulatory region 604564			within coordinates