rs37233341 SNP Detail

Summary

• ID
  rs37233341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTGAAG TCCCAGCTCT
  TGAGCTCTTG TTTGCCTTAT TCTGTATTCC CCCCCGTCCC CCGCTCTCCC CCCACCCAAG
  ACCCTGAACA GTTTGTGTCA ATGGTGCAGC ACTAGTTGGC AGGTGAGGGA TTCTGGTAAC
  ACCCAAAAAG CTTAGAAAGG ATTTCAAAGT TCCAGGTAGA AAGAAAAACT CCTCCTCAAA
  Y
  GATATAAGCA ATAATACATT CTGTTACCAT AAATGAAGTT ACAATCAAGT AATCAGATGT
  GATTAAACTG TTTACCTCCT AGCCTCCATT TTCAAACCCT CAAGCCATTT CTGGATTTAT
  TCGGATTCCT TGTCACGTTA GGACAGTGTG ACTAATACCA GTGGATGACT CTCCTGTGGA
  ACAATCTGAT TAAACTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990096	NES13925789	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37233341					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990096	NES13925789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937128 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1877 bp upstream
Tssr29661	transcription start site region 29661	1273 bp downstream
Tssr29662	transcription start site region 29662	1224 bp downstream
Tssr29663	transcription start site region 29663	1207 bp downstream
Tssr29664	transcription start site region 29664	724 bp downstream
Tssr29665	transcription start site region 29665	685 bp downstream
Tssr29666	transcription start site region 29666	649 bp downstream
Tssr29667	transcription start site region 29667	606 bp downstream
Tssr29668	transcription start site region 29668	377 bp upstream
Tssr29669	transcription start site region 29669	421 bp upstream
Tssr29670	transcription start site region 29670	465 bp upstream
Tssr29671	transcription start site region 29671	1009 bp upstream
Tssr29672	transcription start site region 29672	1112 bp upstream
Tssr29673	transcription start site region 29673	1140 bp upstream
Tssr29674	transcription start site region 29674	1189 bp upstream
Tssr29675	transcription start site region 29675	1199 bp upstream
Tssr29676	transcription start site region 29676	1209 bp upstream
Tssr29677	transcription start site region 29677	1226 bp upstream
Tssr29678	transcription start site region 29678	1305 bp upstream
Tssr29679	transcription start site region 29679	1349 bp upstream
Tssr29680	transcription start site region 29680	1372 bp upstream
Tssr29681	transcription start site region 29681	1474 bp upstream
Tssr29682	transcription start site region 29682	1497 bp upstream
Tssr29683	transcription start site region 29683	1540 bp upstream
Tssr29684	transcription start site region 29684	1565 bp upstream
Tssr29685	transcription start site region 29685	1606 bp upstream
Tssr29686	transcription start site region 29686	1672 bp upstream
Tssr29687	transcription start site region 29687	1770 bp upstream
Tssr29688	transcription start site region 29688	1794 bp upstream
Tssr29689	transcription start site region 29689	1820 bp upstream
Tssr29690	transcription start site region 29690	1850 bp upstream
Tssr29691	transcription start site region 29691	1896 bp upstream
Tssr29692	transcription start site region 29692	1912 bp upstream
Tssr29693	transcription start site region 29693	1943 bp upstream
Tssr29694	transcription start site region 29694	1976 bp upstream
Tssr33800	transcription start site region 33800	1281 bp downstream
Tssr33801	transcription start site region 33801	1626 bp downstream
Tssr33802	transcription start site region 33802	1762 bp downstream