rs37232580 SNP Detail

Summary

• ID
  rs37232580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107512464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTTCAT TTGTATCCAT
  CATAATAAGC ATAATCAAGT ACAGTGCACA GTCAGGAAAG CTCAGAGCAG TTCCCAGCTC
  TGATACTAAT GCCGGGATGT ATGACCTTCC TTGATGTATG ATGTCCTGCA AATATCCTGA
  TGCTTTCTAT CCCTGTCACA GTGCTGTTGT AAAGGATCCA GGGAAGCTGC TAGATGCTTC
  Y
  AGGACTGTTA CTGCAAGGAA CCAGACTTCT GATCCGATGC TGTGATTTTT TTTTTTTTTT
  TTTGATAGCT AATGGTCAAG AAAACAACAG CACCTTTTTC TTATAAGGTG ATTTTTTTTT
  TTTTTTTTTT GGACTTTAGC CCTACAGCTA AGCTAGTTCT TGTTGTTCTT GTTGTTCTTC
  TTCTTATTGT TCTTGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51827516	NES14777361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37232580					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51827516	NES14777361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107512464 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636003	regulatory region 636003	104 bp distal