rs37229949 SNP Detail

Summary

• ID
  rs37229949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117909958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAAGAGC ACCACGAAGC
  GCCTCAAGGG GGTGCTGCTG TGAAGCTGCT GTAGTGCTGG GATCTTCTCA CATGCATGAC
  AAGTCACAAC TCTTAACAGT GGCACAGCCC AGGTCACTTT TGCGCCCTTG ACATTTGCAT
  GCCCCGTTCC CTCATCCAGG GCAAGTCTGT ACCACAGCTT TCATACTTTT CTGAACCTGA
  S
  AGGTGGAATT CAGATGCCTC TGGGTCCGAT TCTGGGCCAC TGCCTCTAGC TGCCTGACTT
  CTCCACCCAG CTGAAGGGTT CTGAGTTCTG GCTTTTGCTG CTCTACCCTT ACTACTGTTT
  TGAGACTGCA GGATGCGCTC ACATCCCAGG ACATTGGAGG AGGTTTCCTG TGTTTCTAGC
  TGAGGGCTGT ACAAGAATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51860103	NES14875911	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37229949					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51860103	NES14875911	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117909958 () rs orientation: forward

Symbol	Name	Function Class
Fxyd4	FXYD domain-containing ion transport regulator 4	562 bp downstream
Rr637413	regulatory region 637413	within coordinates
Rr637414	regulatory region 637414	162 bp distal