rs37224495 SNP Detail

Summary

• ID
  rs37224495
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTTTCT TGGGTTAAGG
  AAAGGCAGGT GCACTTTGAA ATGAGCTGTA AGATAGGGAA CTGAATGGTT TGGGTAAGCG
  AAATGTTAGC TTTTTTCACT AGAATCTGTA AGTATGGGTG AGGGAGCGTG GCTATTAGGC
  TCCTCGGTTT TTTGCCTAAG AGTCAGGTTT GGGAAGTAGA ATTGTGTACA GGCCCTCGGC
  W
  AATGTCATGG TGCTGCTTCC TAGTCTTGGT TCTTCAAAAC TTATTACAGC TGCTAAGGCT
  TATTGGCATT CAAAAGAAAG GAATGTAACA GATGAAAAAC GTTTTGTTCC AAACTTGACT
  GAGAGTCTGG GTATGACAAA CATACCTCAG TTCGCTAAAA TGTGGTGACG AAGTCTGTTC
  AGAAGCTTAA CCAAATCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51652682	NES14652410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37224495					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652682	NES14652410	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145866 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1440 bp upstream
Cpgi13855	CpG island 13855			453 bp distal
Rr367562	regulatory region 367562			1805 bp downstream
Rr367563	regulatory region 367563			1661 bp downstream
Rr398041	regulatory region 398041			70 bp upstream
Rr585709	regulatory region 585709			1861 bp distal
Rr585710	regulatory region 585710			1530 bp distal
Rr585711	regulatory region 585711			884 bp distal
Rr585712	regulatory region 585712			739 bp distal
Rr585713	regulatory region 585713			238 bp distal
Rr585714	regulatory region 585714			763 bp proximal
Tssr1058	transcription start site region 1058			157 bp downstream
Tssr31809	transcription start site region 31809			1979 bp downstream
Tssr31810	transcription start site region 31810			1952 bp downstream
Tssr31811	transcription start site region 31811			1802 bp downstream
Tssr31812	transcription start site region 31812			1715 bp downstream
Tssr31813	transcription start site region 31813			1653 bp downstream
Tssr31814	transcription start site region 31814			1620 bp downstream
Tssr31815	transcription start site region 31815			1565 bp downstream
Tssr31816	transcription start site region 31816			1521 bp downstream
Tssr31817	transcription start site region 31817			1325 bp downstream
Tssr31818	transcription start site region 31818			1052 bp downstream
Tssr31819	transcription start site region 31819			1042 bp downstream
Tssr31820	transcription start site region 31820			1007 bp downstream
Tssr31821	transcription start site region 31821			931 bp downstream
Tssr31822	transcription start site region 31822			665 bp downstream
Tssr31823	transcription start site region 31823			636 bp downstream
Tssr31824	transcription start site region 31824			605 bp downstream
Tssr35783	transcription start site region 35783			1467 bp upstream
Tssr35784	transcription start site region 35784			1400 bp upstream
Tssr35785	transcription start site region 35785			266 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant