rs37222592 SNP Detail

Summary

• ID
  rs37222592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135011570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCTCAA AAGATCATAT
  CAAAACCAGC TCCTTACTCT CTGCCTTTTC TCAGAGAGAC TGCATTAGCC AGGATAACTG
  TAGGCTCACA GTGAAGGGCT AACTCCACGT ATGAAGATGG TGCAGATGAT GGATTTGAAT
  CGAAATTCAC AACAAATGGG TGCTTGGACT AGCTCTGCCA ACGACTCCCA TGATAAGGTC
  R
  TTAGCGCTCT GGTCAGGTGT TCCACGAGCA AATGACAGAC TGACCCAGCC ACCCAGCTTG
  CCCTGTCCTT TTTGCTTTAG TTTCTGGTCT TTGTTTTTAG AAATCAGCTT CTTACTAGGT
  AGCTCACACT GGCTTTTATC TCACCATTCC CCTGCCTCAG GATTGCTGAG GTGCTGAGGC
  ACAATATAGA CTGTGCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034020	NES13903091	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37222592					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034020	NES13903091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135011570 () rs orientation: forward

Symbol	Name	Function Class
Bdh2	3-hydroxybutyrate dehydrogenase, type 2	1383 bp downstream
Gm46826	predicted gene, 46826	within coordinates
Rr585683	regulatory region 585683	903 bp distal
Rr585684	regulatory region 585684	1510 bp proximal
Rr585685	regulatory region 585685	1947 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	1513 bp upstream
Tssr31804	transcription start site region 31804	1872 bp upstream
Tssr31805	transcription start site region 31805	1902 bp upstream