rs37219701 SNP Detail

Summary

• ID
  rs37219701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85309159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTCGG GAGTGCAGGC
  TTACTTAAGG ATGCGTAGAA TGGGGGTGGG GACAAATGGA GGATCACTCA AGGTTAGGCA
  CAAACACCCC TGACAGCGTC TCAATATTTG GTGGCATTTT ACACTAGCTG GGACATTAAG
  TCTCTCCAGA TTCCTCCATG CAGAGACATG TCTATTTTTG AAAGAAAACA AGTCCTATTT
  W
  AAAAAACTCT AGGGACGTAT TCTCAGAAAG CTTAGTTCGA CGAAGTTGGG GGGGGGGCTG
  AATTCGGAAC CATTCTCACT TCTAAACCCA GCCACATCCC ACCTTTGTAG CATTTTCTTT
  CTTCCTTCAA AGTTTTCTCT AGCACATCTG CTGTCCCCAC TCCTGGCAAG CCCAGGGTCA
  CTTCAGCTCT GGAAGCAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51355973	NES13743484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37219701					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355973	NES13743484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85309159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17641	CpG island 17641			190 bp proximal
Rr399729	regulatory region 399729			777 bp upstream
Rr399730	regulatory region 399730			1240 bp upstream
Rr633174	regulatory region 633174			373 bp distal
Rr633175	regulatory region 633175			563 bp proximal
Rr633176	regulatory region 633176			1232 bp proximal
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant
Tssr57414	transcription start site region 57414			387 bp upstream
Tssr61744	transcription start site region 61744			1235 bp downstream
Tssr61745	transcription start site region 61745			1301 bp downstream