rs37217099 SNP Detail

Summary

• ID
  rs37217099
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACATAATT CATACTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTAATC AGAATTGGAT CCGAAGAAAG CTGGTGGCAG CTCTCCTCTC CCATCTGTCC
  TCTCTGAGAT GTAAGAATGG GAGCTCTCCT TACCGCAGGC CAGTTCTTCC TTTCTACCTG
  S
  CTACACCGGT GCCCTGGCAT GCGTCTGCTC TGCTGCCCTC TGCTTTAAGT TTCTGAGTAA
  AGATTTTCAG AAACAAAGGA CTCTGCATCA GCCTTATCCA CCAACCAATG AATCAGGTAA
  GAAGTATTAC TTTTCTTACA CTTCTCTGAT AGAAAGCAAA CTTTCCTTTT ATCTTAGAGT
  TAGTATATAT TGATGATAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51616835	NES14661528	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	C	C	G	G	G		G	G	C		G
ss135875918	ENSMUSSNP1032632	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320958540	CHEV_3_127650975	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37217099					SNP	C	C	C	G	C	G	C	C	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616835	NES14661528	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741706 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	964 bp upstream
Rr584909	regulatory region 584909	377 bp proximal
Rr584910	regulatory region 584910	816 bp proximal
Rr584911	regulatory region 584911	1043 bp proximal