rs37214424 SNP Detail

Summary

• ID
  rs37214424
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75464620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAGGCTC TAGGGGCTAG ACCGGTGGGC TCCGCCTACT
  CCGAAGCAAC AGTACCCCCA TACCCCCAAA GGACAGCCCA CTCCCGTGTT CACTGGACCA
  K
  CCGGCTAAAA GAGCTAAGCA GGACCTGAGG AAGGGCCAGG TGCGATGCCA GAGGGGAGAA
  AGTCCGAAAT GAAGGGGTCA GAGCACCAGG AACTAAGAGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss51557831	NES14678958	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs37214424					SNP	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557831	NES14678958	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75464620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	within coordinates
Pdcd10	programmed cell death 10	461 bp upstream
Rr578348	regulatory region 578348	513 bp distal
Rr578349	regulatory region 578349	within coordinates
Rr578350	regulatory region 578350	455 bp distal
Rr578351	regulatory region 578351	245 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	180 bp upstream
Tssr29563	transcription start site region 29563	197 bp upstream
Tssr29564	transcription start site region 29564	217 bp upstream
Tssr29565	transcription start site region 29565	263 bp upstream
Tssr29566	transcription start site region 29566	281 bp upstream
Tssr33586	transcription start site region 33586	442 bp upstream
Tssr33587	transcription start site region 33587	394 bp upstream
Tssr33588	transcription start site region 33588	374 bp upstream