rs37202891 SNP Detail

Summary

• ID
  rs37202891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68191441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGATC CACTGCAGCA
  AAGCCATTGG AGACGTGGCT CGTTCCCTGG TGGCTGATAG ATTTATGGAT ATCTCTCCAG
  ACCAAATCTC AGCATGGGAA AGCAGGGCAA GGGAAGGAGA TGGGAACAAA TGTGTGTGAA
  CAATTCATGT CATTGCTTAA TCGATCCAAA TCAACACAAA TCTACTTTAC TGTTTTGCAA
  R
  CACTTTTAAT GAATCAAGAA TTGCGAATGT TTTAGAAATA AAGCCCAATC GAAGTCTCTC
  TCTAAATGCT GGAATTTAGA ATTCAGAATT TAGAATCCAC AAGGTTCACA TTCTATGAAG
  GAAAATGTTC TCTTTTACCT TAAACCATAA ATTCAAAGTT CATTCAAGGA GAAAAGTCAG
  AAATAATAAA GTTTAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50976048	NES13930604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37202891					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976048	NES13930604	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68191441 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	104 bp distal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	1843 bp downstream