rs37196717 SNP Detail

Summary

• ID
  rs37196717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71225676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCACACA TTCTCACACA
  CACACATAAA CACACACACC AACTTACAAA TACACAAGTG CATGCACACA CACACACACA
  TACACACACA CACTCACAAG CACACTCACA CACTCACACA CACACATAAA CACACACACC
  AACTCACAAA TACACAAGTG CATGCACACA CATACACACA CACACACACA CTTCTACTGG
  Y
  CATATAGAAC TAAGGAAGAG CCCCCAGATG TGTCATTTTG GATTGTCTTG GATTTATAAG
  ATGTGTCTTA AATTTATAAG CTACAAAACA GCAGGACAAT ACTTATTTTT TTCATTTAAA
  ATATTCCAAT TCCCAAACTG TGATAAAATA TTTCTTCTCT GATGCATTTA GTCTGTGATA
  TTTTGTTATG GTAACCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss50470092	NES13703549	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs37196717					SNP	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50470092	NES13703549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71225676 () rs orientation: forward

Symbol	Name	Function Class
Rr393876	regulatory region 393876	1105 bp upstream