rs3719643 SNP Detail

Summary

• ID
  rs3719643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:104356639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGCTGCC TACCTTGTGA GGTCTTTTGG TATTTCATTT
  TGTTTTCTGG CAGGGTCTCT GATTGGACTA GGTTGGCTAG CCAATAAGTC CCCAGGATCT
  Y
  GCTTACATTC CCAGGAGGCA CTGGGAGCAA TGGCCATACT TGTCTTTTAT GTGAGTGCTG
  GAGCTCTGAC CCATGCTTGT ACAGAGCTGT CGCCAAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5095923	WI_WGS_2_105430198	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3719643					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104356639 () rs orientation: forward

Symbol	Name	Function Class
Rr562086	regulatory region 562086	400 bp distal