rs37193918 SNP Detail

Summary

• ID
  rs37193918
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTACCT CATAACTGTA
  ATTTTGCTGT TAGGAGTCAT AATGTAAATA TCTGTGTTTT CTGATGGTCT TGGGTGACCT
  ATGTCAAAGG GGCTGCCACT CACAGGCTGC ATTAGAAGAT TGTGTGCCTG GGGAAACAAA
  AGACACGCTG CCAAAGGATG TGCACGAGGA AAAGGCGCGG GAACCGGACA GATGCGCTGC
  R
  CTATAGGCTT TAAATCAACA ACTTTATATA ATGAGTTCTA CATGGACTCC CCAACTCAGC
  TACCTGACTC GGGCAACAGG CATCCAAGTG AATGTATGCC CTACACAAGT GGTGCTTGCT
  CTGAGTACCT AACTACTTCC AACACTCTGT GGACATAAAA ATTCTGTAAA TTGAGATTTA
  AAAAAAACCC ACTCAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259937	NES13793803	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37193918					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259937	NES13793803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104640 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	957 bp downstream
Rr627895	regulatory region 627895	1905 bp distal
Rr627896	regulatory region 627896	1213 bp distal
Rr627897	regulatory region 627897	694 bp distal
Rr627898	regulatory region 627898	1123 bp distal
Rr627899	regulatory region 627899	1356 bp proximal
Tssr55453	transcription start site region 55453	963 bp downstream
Tssr60158	transcription start site region 60158	1364 bp upstream
Tssr60159	transcription start site region 60159	1202 bp upstream
Tssr60160	transcription start site region 60160	1168 bp upstream
Tssr60161	transcription start site region 60161	1144 bp upstream
Tssr60162	transcription start site region 60162	975 bp upstream