rs37187415 SNP Detail

Summary

• ID
  rs37187415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68490492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA TTGAACGGCA TTTCCCTTCA
  R
  AACTGTTCTC AGCCATGCTG CTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51542861	NES14685741	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs37187415					SNP	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542861	NES14685741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68490492 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1190 bp distal
Rr578031	regulatory region 578031	1376 bp distal
Rr578032	regulatory region 578032	471 bp distal
Rr578033	regulatory region 578033	530 bp proximal
Rr578034	regulatory region 578034	1883 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	973 bp upstream
Tssr29468	transcription start site region 29468	944 bp upstream
Tssr29469	transcription start site region 29469	995 bp upstream
Tssr29470	transcription start site region 29470	1025 bp upstream
Tssr29471	transcription start site region 29471	1053 bp upstream
Tssr29472	transcription start site region 29472	1151 bp upstream
Tssr29473	transcription start site region 29473	1177 bp upstream