rs3718521 SNP Detail

Summary

• ID
  rs3718521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GAAAGAAAGA AAGAAAGAAA
  R
  AAAAAAGAGA AAAGAAAGAA TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5094797	WI_WGS_3_117242640	WI	MOUSE	f	SNP	A			G
ss45559529	mCV24793250	ABI	CRAMUS_MOUSE	f	SNP		A	A	G	A
ss135674993	ENSMUSSNP2905490	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A
ss320896718	CHEV_3_116606445	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3718521					SNP	A	A	?	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			562 bp proximal
Rr583801	regulatory region 583801			593 bp proximal
Rr583802	regulatory region 583802			834 bp proximal
Tssr31391	transcription start site region 31391			50 bp upstream
Tssr31392	transcription start site region 31392			136 bp upstream
Tssr31393	transcription start site region 31393			170 bp upstream
Tssr31394	transcription start site region 31394			192 bp upstream
Tssr31395	transcription start site region 31395			837 bp upstream