rs37185116 SNP Detail

Summary

• ID
  rs37185116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31090089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGATGT CACGTGGTCT
  CACTGCTGTT GTCACTCACT ACACACAGAC AGACACAGAC ACACAGAGAC ACACACTTGT
  TACCTCCAGA ACCCTGTGGC CAGCCCAGCC TAACTGCGCC TATAAACATT GAGAGACACC
  ACTCTCTGGC ACTCTCAGGT TCAAGGTTGG GGAACGCCTT AAGACAAGGA CCATGCCGTG
  Y
  GTGCGCAGTA TCTGTACCAG TAAATTTCTT TAGCTTAGAA ACCCGTCCAC GTCAAAACCA
  GAAGTAGAAG ACAAGGCGAA TCATGTTGCT ACTGAATGTG ACTGAAATCT ACCATGATTT
  AATATCTACC ATGTATTTAA AATTCTTAGA TTAGGGGATA TGAAATATGG GTGTGTGTAG
  GGAGATGGGA GTTGGATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51260171	NES13793976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37185116					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260171	NES13793976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31090089 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	581 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	115 bp distal
Rr627886	regulatory region 627886	within coordinates
Rr627887	regulatory region 627887	422 bp proximal
Rr627888	regulatory region 627888	592 bp proximal
Rr627889	regulatory region 627889	1234 bp proximal
Tssr55448	transcription start site region 55448	616 bp upstream
Tssr60154	transcription start site region 60154	319 bp downstream
Tssr60155	transcription start site region 60155	1648 bp downstream
Tssr60156	transcription start site region 60156	1862 bp downstream
Tssr60157	transcription start site region 60157	1933 bp downstream