rs37182128 SNP Detail

Summary

• ID
  rs37182128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151949888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTGCATA CTAAAAAGTT
  ATTCCTTCTA GACTGGGGTA TCTGTGATAT GGAGGATAAC CATGTACATC AGTTCTCCAT
  TGAAATGAAC AAAACATGCT CCATTTTTAT ACATTGAATC ATTTGAATCA GAAATTGATG
  TTCTTTAATC ATATTAAAAA TATTTTTGTT GGATTGAAGT GAATCTCCAA AATCATAGTC
  Y
  TACTGAGTTA CATCTGTATC GTCATAAGCT TTTATCAGAA AAAAGCAGTG CCATGATGCC
  ATTTAATTGT GCAGTTTTGC TGCCAAGATG TTTTAAAGAC ATAATAGTTC ATATATTCCT
  ACAACTGCCA GTCCAGTTAT AAATACATAT ATTTAACCCA CTAACTTTAT AAAATAGCAT
  AGGATTACTA TCCGTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060324	NES13426281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37182128					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060324	NES13426281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151949888 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nexn	nexilin			Intron
				Noncoding-Transcript-Variant
Rr587498	regulatory region 587498			1085 bp proximal
Rr587499	regulatory region 587499			1433 bp proximal
Rr587500	regulatory region 587500			1599 bp proximal
Rr587501	regulatory region 587501			1891 bp proximal
Tssr36172	transcription start site region 36172			1432 bp upstream
Tssr36173	transcription start site region 36173			390 bp upstream
Tssr36174	transcription start site region 36174			353 bp upstream
Tssr36175	transcription start site region 36175			264 bp upstream
Tssr36176	transcription start site region 36176			247 bp upstream
Tssr36177	transcription start site region 36177			218 bp upstream
Tssr36178	transcription start site region 36178			173 bp upstream