rs3718074 SNP Detail

Summary

• ID
  rs3718074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132406368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTCACAG TTCTATCAGA AGCATCTGTT AAGTTTTCCA
  TATATCATTC TCAGACTGCT CTAGCCTGTA GCTCCAAACT TACAAATTCC TCCTACAAAC
  R
  AAGGCTTAGA AACATGGGGT GAGACTTATT AGAGAGACTC AAGTTCCTGT TACTATGTTC
  TGTGTTAGTT CTGTCTTTCG CTTTAACAGA ATGTCTGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5094345	WI_WGS_3_133182962	WI	MOUSE	f	SNP	G			A
ss45465851	mCV22641106	ABI	CRAMUS_MOUSE	f	SNP		G	A	A	G
ss135913854	ENSMUSSNP1446552	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3718074					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132406368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			852 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant