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rs37179604 SNP Detail
Summary
  • ID
    rs37179604
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:30778613 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCAGCAGG ATGTCCCTCG
    CTCTGGCTTT GTGATGGGTG GATGACACAC CCAGCTCCTT TAAATCACAC CGCCTCTAGA
    AGAATGGGTG ATATAGAAGC CTAAGGCAGT AAAGTTGATG CTATGAAGGG TCTACTTAAG
    AGAGTTACGC AAAGGAGAAT GCGGCTAAAG GAGTCCTGCC TCCAACAGGA CTGGAGACCG
    Y
    GTTGCATTGC CCAGGCGCTT TAGAAATCTG TATAAAAAAG ACAATTCTGT AATATCATTG
    AAGTTTAGGG TTAACGAGAA AGTTCCTCTA ATGTTTGTTC TCCTAGACTG ACCTATGATG
    AGGCTCCATT CCCTTAACAA AAAGAGACAG CCCTGACTTA CAGCCAGCCA TCAGGGCCAT
    CTCCATATCA AAGAGCATGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
ss51448604 NES14439946 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
rs37179604 SNP C C C C C C T C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51448604 NES14439946 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:30778613 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr374761 regulatory region 374761 within coordinates
Rr574818 regulatory region 574818 1805 bp distal
Rr574819 regulatory region 574819 1249 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory