rs37178807 SNP Detail

Summary

• ID
  rs37178807
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75462991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTAAAAAC CTGACCCCCC CCCCCAAAGG GTCACTTCTT
  GTAATGAACA TGGTACAATT TCTCCAAGAT TCTGCACTTA ATTTTCACTT AATGAAAGCA
  W
  GAATATCTGT AAAGTAAGTT CTGTGAAAGT TTCACCCATA GTTTTTGAAA ATGGTAAGAA
  AATAGAAATG AAAAGGACTA TTCTCTTAAT GGCAACACTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51557840	NES14678955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37178807					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557840	NES14678955	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75462991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	640 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	162 bp proximal
Rr578349	regulatory region 578349	1117 bp proximal
Rr578350	regulatory region 578350	1153 bp proximal
Rr578351	regulatory region 578351	1874 bp proximal
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1	1809 bp upstream
Tssr29563	transcription start site region 29563	1826 bp upstream
Tssr29564	transcription start site region 29564	1846 bp upstream
Tssr29565	transcription start site region 29565	1892 bp upstream
Tssr29566	transcription start site region 29566	1910 bp upstream
Tssr33586	transcription start site region 33586	1105 bp downstream
Tssr33587	transcription start site region 33587	1219 bp downstream
Tssr33588	transcription start site region 33588	1240 bp downstream