rs3717584 SNP Detail

Summary

• ID
  rs3717584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG TTACCCAAGC CCTAGTGAGT
  R
  ACCTCAGCCC ATGAGTACAT GGATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5093849	WI_WGS_3_26465601	WI	MOUSE	f	SNP	G		A
ss134696973	ENSMUSSNP6981875	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320687954	CHEV_3_26538664	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3717584					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693891 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	296 bp distal
Rr574325	regulatory region 574325	189 bp distal
Rr574326	regulatory region 574326	414 bp proximal
Spata16	spermatogenesis associated 16	Intron