rs37175728 SNP Detail

Summary

• ID
  rs37175728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55115972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCGGGC TTCCGGAGCC
  AGTTTTAGGG CTCGTTATAA TTTAATGATG CTGCACTGGG GTGAGTTGGG GGTGGGGTGT
  CTTCTTGGCT TCGCCTGGTG GGGATTTTCT ACCGGGGCAG GGGAGGGGGA GGCGGCAGGG
  TGGAGGGTTG CAAAGCTCTA AACTCAATAG CCCCATTCTC TGTGAGTGTG GCTGTATTGA
  R
  CATCCCAGGG GTCACATGGA GCTCTAGGCT CCTGGTCTGG CTGGGTCTAC TTTGCCAGGA
  ATTTTCTCTC ACTGCTTCTG GGAAGCTGTG AAAGAGACTT GAGTGGGGCT GAGCAATGTA
  AGGATCAACA GAGGGCAAGC ATGTTTGACA CCGGGTGTGC AGCTCTCTGC TGGTGAGGCT
  GATGGGGTCA GGGACACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51222258	NES14304670	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37175728					SNP	A	A	G	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51222258	NES14304670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55115972 () rs orientation: forward

Symbol	Name	Function Class
Gm31418	predicted gene, 31418	within coordinates
Gpam	glycerol-3-phosphate acyltransferase, mitochondrial	306 bp upstream
Rr549751	regulatory region 549751	221 bp distal
Rr549752	regulatory region 549752	within coordinates
Tssr159853	transcription start site region 159853	361 bp upstream
Tssr159854	transcription start site region 159854	297 bp upstream
Tssr159855	transcription start site region 159855	283 bp upstream