rs3717446 SNP Detail

Summary

• ID
  rs3717446
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132406270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGGTTGA AACCCACTGC TCTAGACTAA TTGCTAATGA
  ACTGCTTGTT CCCTTTGATG AGCAGGACCT TTACGGTCAC ATCTCTACAG CATTCTGGTC
  K
  TTCACAGTTC TATCAGAAGC ATCTGTTAAG TTTTCCATAT ATCATTCTCA GACTGCTCTA
  GCCTGTAGCT CCAAACTTAC AAATTCCTCC TACAAACAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5093709	WI_WGS_3_133182864	WI	MOUSE	f	SNP	G			T
ss45541193	mCV22641098	ABI	CRAMUS_MOUSE	f	SNP		G	T	T	G
ss135913845	ENSMUSSNP563681	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3717446					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132406270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			950 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant