rs37171966 SNP Detail

Summary

• ID
  rs37171966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151898106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTAAAA GACATTAGGG
  GAAGAATAAT GCAAAAGAAC TTTAGTCTGT TTTAACACTT GAAAACCCCA GAACTCACGT
  GAACTAATGC ATGGTTGCCG CTGCTGCTGA CTGACAATTT CAAACTCCTA CTTTATGGCC
  ACATTTACGA CATTTATGGA CATTTATGGA GATGCTGGAC AAAATTCGGA ATGGTAAAAG
  R
  AGATTCTCAA AGGCTACTGA GCTCACTGAG TCCTGATCTC AGAAGGCAAG AAAAAAAGTA
  TGGCTGAGGG AAAGGGCAGC TGTCATGCTT CCTCTTCAGC CACATAGTAA AATTTCCAAA
  AGAAATAGTT AACTAAAACA AACTCAGTCA TTGTTCCAAC TAGGTGGCCA TTTTGGGTTA
  GAGAAGGAGA GGGAGGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060586	NES13427721	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37171966					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060586	NES13427721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151898106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1232 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			1504 bp upstream
Gm64624	predicted gene, 64624			within coordinates
Rr587481	regulatory region 587481			928 bp distal
Rr587482	regulatory region 587482			622 bp distal
Rr587483	regulatory region 587483			130 bp distal
Rr587484	regulatory region 587484			1366 bp proximal
Tssr36163	transcription start site region 36163			1254 bp downstream
Tssr36164	transcription start site region 36164			1278 bp downstream
Tssr36165	transcription start site region 36165			1304 bp downstream
Tssr36166	transcription start site region 36166			1334 bp downstream
Tssr36167	transcription start site region 36167			1364 bp downstream