rs37168233 SNP Detail

Summary

• ID
  rs37168233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83697487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTCTCC AAGACTCCGC
  CCACAGGGAT GTAAGCCGGC CCCGGACGGA GGCAGGGTCT CCGGACCTTC TGGGAAATGG
  CCCCTTTCTC GTTCCTCCTT CTCTCCGGGC TTTCTTCCTT CTCTTCATCC TCTCTCCCAG
  GCTGTTCCCT ATCTGTTCCC ACCAGTTCCC ACTGGCTCAG GGTAAAAGAG AGGCGAGGCA
  S
  TGTACTTCCA CCTTCTCCTT CCGCCTTGAG GTAATCAATC TAAGAGTGCT CTGAGTCACT
  AGATGTCACC TTAAAGGGTT ACTTGCTGGG CTCTGCCCCA AGGTTCGGAT TCAAACCTAT
  GTGGTGGGGC CTACCTCCAG GGAGTTGATG ATGCTGATAC TTGAAGTTTC TCCGGGCTAG
  TTCTTGCCTC CTATTGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51559274	NES14677635	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	C	C	C	C	C	C	C
ss135417540	ENSMUSSNP291755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37168233					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559274	NES14677635	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83697487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	32 bp distal
Gm7115	predicted gene 7115	within coordinates
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	within coordinates
Rr578903	regulatory region 578903	327 bp distal
Rr578904	regulatory region 578904	within coordinates
Rr578905	regulatory region 578905	52 bp proximal
Rr578906	regulatory region 578906	181 bp proximal
Rr578907	regulatory region 578907	1202 bp proximal
Tssr33830	transcription start site region 33830	219 bp upstream
Tssr33831	transcription start site region 33831	188 bp upstream