rs37159406 SNP Detail

Summary

• ID
  rs37159406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146958819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCCGATG GCTGCACTTA
  GCTGAAACAA GGCCCCTGCT CTGGGTAGGC TCTCTGCCCA GTTCATCCTC ATTGCCTCAC
  TGCTCCGCTC CCAGTTCCCT TTCACCATGG CTGCGCCTGC AGCTTTAATG GTGAGCATCA
  GCACTGAACA GCATCTCTAC CAGTGCAAGT GTCTTCCCTG TGCAGAGAAA AGAAGCCGCT
  Y
  TCTCACCATG CCCCACCTAC AGACGATTTA TCTACCAGAC TCCATTTCCT GCATGCCATT
  TGGCAGTATT TATCTTGTGT GTGGGCTCCC AGGGAGGACT GTCATAAAGG ATTGTCCTGT
  TAGAACCCAG ACTCACATTT TTTTCATCTA AATAATGAAG AGGTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51049400	NES13898628	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37159406					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51049400	NES13898628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146958819 () rs orientation: forward

Symbol	Name	Function Class
Rr375883	regulatory region 375883	918 bp upstream
Rr587141	regulatory region 587141	419 bp distal