rs3715923 SNP Detail

Summary

• ID
  rs3715923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150173616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTCTCC AGGTCACTCG
  ATGTGGTCTT GATTGTCGAG AACTCAGGTC AGGGTCAGGC TGTCAGCCAC CTGGAGTCCC
  TGAGAGTGGG GAAGCCCAAG GCCCTGCACT ATGCTGGTCC ACTCTTCTTT CACGCTTGTC
  AGCAAGAAAG CTGTGCCCAG AGGCCAGCCT TCCCTCCTGT CGTTTCAGTT TGAAATTCTC
  R
  GCAGTCTGCG CAGAATTTGA GGCAGGAAGC CTAAGGCTTG TTTCCTGTCT CTTTGCCTCA
  GCTCAAGGCA CCAGCGTCCG CCCTAATTAT AGGTCCCTTC TATTAAAAAC TTGAATGCTT
  TCCAAGGGCC GAGCGGGTAG TCAGCACTTT GGTAGAGACA GGTCACCTGG GTGTCACACG
  CAGAGGCCAC AAGCTGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5092177	WI_WGS_4_145481999	WI	MOUSE	f	SNP	A						G
ss46711512	NES11007451	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3715923					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711512	NES11007451	PERLEGEN	MM_PANEL	f	SNP	A/G
ss148046965	ENSMUSSNP4128850	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150173616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	658 bp distal
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	1727 bp downstream
Rr605172	regulatory region 605172	1784 bp distal
Rr605173	regulatory region 605173	1425 bp distal
Rr605174	regulatory region 605174	1089 bp distal
Rr605175	regulatory region 605175	within coordinates
Tssr40369	transcription start site region 40369	1618 bp downstream
Tssr40370	transcription start site region 40370	1490 bp downstream