rs3715834 SNP Detail

Summary

• ID
  rs3715834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT TTCCACTGAA GTATGTATCC
  Y
  GTATTGTTCA GTCTGTTATT CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5092088	WI_WGS_3_26465399	WI	MOUSE	f	SNP	C						T
ss45440697	mCV24231363	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		T
ss51442520	NES14434437	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		T	T	T	T		C	C	C	C		C
ss134696967	ENSMUSSNP5172216	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320687952	CHEV_3_26538462	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3715834					SNP	C	C	C	T	C	C	T	T	T	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442520	NES14434437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693689 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1986 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	94 bp distal
Rr574325	regulatory region 574325	within coordinates
Rr574326	regulatory region 574326	616 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1903 bp downstream
Tssr28598	transcription start site region 28598	1880 bp downstream