rs37157941 SNP Detail

Summary

• ID
  rs37157941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120897320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTAAACT TTAATTACAG ATAATTAAAA TCCCTATATA
  AATTCTGGGG ATTTCCTTTG ATTGCAGCAA TTTTTCCAAT GATTTTTGGA TGCTGTTTTT
  W
  GAGAAAGATA AATAGTCCAA GAACTGCCCT ATCACCCCAG TAATCAAATA TGCTAAAGGT
  GAATTGAAGG GGAAAAATCC TTATGAAATT TGAGGCAAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51606458	NES14664198	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	T	A	A	T	A	A	T	A
ss60441589	NES15944805	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	T	A	A	T	A	A	T	A
ss135713485	ENSMUSSNP935431	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37157941					SNP	A	A	A	A	A	A	A	T	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51606458	NES14664198	PERLEGEN	MM_PANEL	f	SNP	A/T
ss60441589	NES15944805	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120897320 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr397968	regulatory region 397968	1171 bp upstream
Rr584003	regulatory region 584003	1199 bp distal
Rr584004	regulatory region 584004	845 bp proximal
Rr584005	regulatory region 584005	1336 bp proximal