rs3715382 SNP Detail

Summary

• ID
  rs3715382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119654165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACACAGG AGGATACTTA
  CAGAATGAAG ACAACGTGGG AGCCAAACAT GGAAGTAATG AAGTATGACA CTGGTGCCAA
  GCCTGGAGCA AAGTACAAAG CCAATGTAAT TAATACATAA TGATTGATAC ACAGTGCTGT
  GTGAGGCAGA TATATAAATG GATGGAAACT GAAAAGCCAT GAGTCCCAGT AGGTATCAGG
  Y
  CACTCACTCG CAAGACTGAC TAGCAAATAC ATACCAGGAG ATCTAAAAGT AAGGCGGGTT
  TACTACTTAA GAAGGCAAAT CACACTTCGT GTGTACCACA GTGCCCTTGT GGAGGCCAGA
  GGACAACCTG TGTGTTCTCT TCTTCTGCCT TGTGGGTTTG GAGGCTCAAC CTTAGGTTAT
  TGAACTTGGC AGCAAGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss5091636	WI_WGS_3_120212884	WI	MOUSE	f	SNP	C					T
ss51015282	NES13913553	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs3715382					SNP	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51015282	NES13913553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119654165 () rs orientation: forward

Symbol	Name	Function Class
Rr583946	regulatory region 583946	1767 bp proximal