rs37146372 SNP Detail

Summary

• ID
  rs37146372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90453822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAATCTG GAAGATTATG AAACAGGTAA AACGACCCAA
  ATCTCTCTCA AGGTTTTAGT TAAGAGCAGA ACACTGTGAA ATTCTAGTAG TAATTTTAAC
  R
  TTAATGGTAA TGATAAGCAA TCCCTTTTCA TGTTGTTTTC CTTTTAAATA AACTGAGTTG
  TGAGGAGCTG GAGTAATTAG ACTCCCCAAT TGACAGCTGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51362827	NES13737463	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37146372					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51362827	NES13737463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90453822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44421	predicted gene, 44421			1626 bp upstream
Gm66826	predicted gene, 66826			within coordinates
Klf15	Kruppel-like transcription factor 15			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr634215	regulatory region 634215			1388 bp distal
Rr634216	regulatory region 634216			624 bp distal
Rr634217	regulatory region 634217			9 bp proximal