rs37144649 SNP Detail

Summary

• ID
  rs37144649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68191858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATATGTA GAGCCATGTT
  CTCAAGGCTG ACACTTTGCC CACTCTCAAG GCTGATGCCT TGCCCATCTT CAATTTATGG
  ATGAAGCTTA CATCTGTATG GTGGTACCTA TGAAAATGGC TTTCAGAGAA CTCTAGACGT
  GAGGTATTCA GGGTATCATT TTTCTTCTCT AATTCTTCTT TCCTCTTAAT CTACTGCATA
  R
  ATGAAAATAA AATGTGTCAG AGTTTTCTTA ATATTACAAT GGTGAATCTA AACTCCAGTT
  TCAGCAATGA AACCCTCTGT TGGATACTAT CCAAAGTCAT TTGCACAGCC CTTCAAGGGA
  CTATTTAGTT TGCTCCAAGT GATTCTATGC CTTCTGTTGA ACAGAGCCTA GGAACTGAGT
  TGGTAATAGC AGGCATCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50976034	NES13930611	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37144649					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976034	NES13930611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68191858 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	521 bp distal
Schip1	schwannomin interacting protein 1	Intron