rs37141841 SNP Detail

Summary

• ID
  rs37141841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130963116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGACTT ATCTGGGCAT
  TGGAAATGAC TCAGAATGCT CAGAATTCTG TAGAACCCCA GGGCTGAGAT CTGCTCGGCC
  TCCACCTCTA ACTCATTTCA GGATTTTGTG CTTTTAAATC CAAAACCAAA GGTGCTTTTT
  CCTTGACTCA TAAGCGCATC CTAAGAGGAG TGACGTCACA GTGTCCCTCA AGGCAAAGCG
  Y
  CTTTTCTGCC CAGGTAGAGT GAGTGGGTGA TGGGAAGGGA GGGGAAGGGG CCTTCAGTTC
  TGAATCATAT TGCACCTTAG TGGAGGATCC CCCACAGCAC ACAGCGTTCC CTCATGGCGG
  TTACTGGAGC TGTACAAGAC TGCTTCCGAG TAGTGTATGC TCTTTTCATG GTGTGCAGAA
  AATGTTATAA TATAACTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634949	NES14649611	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37141841					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634949	NES14649611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130963116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr585283	regulatory region 585283			1031 bp proximal
Tssr31716	transcription start site region 31716			953 bp upstream
Tssr35679	transcription start site region 35679			1972 bp downstream