rs3714059 SNP Detail

Summary

• ID
  rs3714059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CTTGCTTAAA CAGAAGTTTG
  Y
  CTTGCTTTCA AAGGCAAACT TGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5090312	WI_WGS_4_57124712	WI	MOUSE	f	SNP	C						T
ss38015126	NES09395515	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T		C	C	T	C		C
ss321137358	CHEV_4_58220384	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3714059					SNP	C	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015126	NES09395515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	862 bp distal
Rr592872	regulatory region 592872	426 bp distal
Rr592873	regulatory region 592873	849 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	916 bp upstream
Tssr41870	transcription start site region 41870	1178 bp upstream
Tssr41871	transcription start site region 41871	1153 bp upstream
Tssr41872	transcription start site region 41872	992 bp upstream
Tssr41873	transcription start site region 41873	968 bp upstream
Tssr41874	transcription start site region 41874	937 bp upstream
Tssr41875	transcription start site region 41875	925 bp upstream
Tssr41876	transcription start site region 41876	896 bp upstream
Tssr41877	transcription start site region 41877	864 bp upstream
Tssr41878	transcription start site region 41878	839 bp upstream
Tssr41879	transcription start site region 41879	815 bp upstream
Tssr41880	transcription start site region 41880	722 bp upstream